elastic_membrane_constant_pressure.C

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//-----------------------------------------------------------------------bl-
//--------------------------------------------------------------------------
//
// GRINS - General Reacting Incompressible Navier-Stokes
//
// Copyright (C) 2014-2016 Paul T. Bauman, Roy H. Stogner
// Copyright (C) 2010-2013 The PECOS Development Team
//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the Version 2.1 GNU Lesser General
// Public License as published by the Free Software Foundation.
//
// This library is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc. 51 Franklin Street, Fifth Floor,
// Boston, MA  02110-1301  USA
//
//-----------------------------------------------------------------------el-

// This class
#include "grins/elastic_membrane_constant_pressure.h"

// GRINS
#include "grins_config.h"
#include "grins/assembly_context.h"

// libMesh
#include "libmesh/getpot.h"
#include "libmesh/quadrature.h"
#include "libmesh/boundary_info.h"
#include "libmesh/fem_system.h"

namespace GRINS
{
  ElasticMembraneConstantPressure::ElasticMembraneConstantPressure( const GRINS::PhysicsName& physics_name, const GetPot& input )
    : ElasticMembraneAbstract(physics_name,input),
      _pressure(0.0)
  {
    if( !input.have_variable("Physics/"+physics_name+"/pressure") )
      {
        std::cerr << "Error: Must input pressure for "+physics_name+"." << std::endl
                  << "       Please set Physics/"+physics_name+"/pressure." << std::endl;
        libmesh_error();
      }

    this->set_parameter
      (_pressure, input, "Physics/"+physics_name+"/pressure", _pressure );

    // If the user specified enabled subdomains in this Physics section,
    // that's an error; we're slave to ElasticMembrane.
    if( input.have_variable("Physics/"+PhysicsNaming::elastic_membrane_constant_pressure()+"/enabled_subdomains" ) )
      libmesh_error_msg("ERROR: Cannot specify subdomains for "
                        +PhysicsNaming::elastic_membrane_constant_pressure()
                        +"! Must specify subdomains through "
                        +PhysicsNaming::elastic_membrane()+".");

    this->parse_enabled_subdomains(input,PhysicsNaming::elastic_membrane());
  }

  void ElasticMembraneConstantPressure::element_time_derivative( bool compute_jacobian,
                                                                 AssemblyContext& context,
                                                                 CachedValues& /*cache*/ )
  {
    const unsigned int n_u_dofs = context.get_dof_indices(_disp_vars.u()).size();

    const std::vector<libMesh::Real> &JxW =
      this->get_fe(context)->get_JxW();

    const std::vector<std::vector<libMesh::Real> >& u_phi =
      this->get_fe(context)->get_phi();

    libMesh::DenseSubVector<libMesh::Number> &Fu = context.get_elem_residual(_disp_vars.u());
    libMesh::DenseSubVector<libMesh::Number> &Fv = context.get_elem_residual(_disp_vars.v());
    libMesh::DenseSubVector<libMesh::Number> &Fw = context.get_elem_residual(_disp_vars.w());

    libMesh::DenseSubMatrix<libMesh::Number>& Kuv = context.get_elem_jacobian(_disp_vars.u(),_disp_vars.v());
    libMesh::DenseSubMatrix<libMesh::Number>& Kuw = context.get_elem_jacobian(_disp_vars.u(),_disp_vars.w());

    libMesh::DenseSubMatrix<libMesh::Number>& Kvu = context.get_elem_jacobian(_disp_vars.v(),_disp_vars.u());
    libMesh::DenseSubMatrix<libMesh::Number>& Kvw = context.get_elem_jacobian(_disp_vars.v(),_disp_vars.w());

    libMesh::DenseSubMatrix<libMesh::Number>& Kwu = context.get_elem_jacobian(_disp_vars.w(),_disp_vars.u());
    libMesh::DenseSubMatrix<libMesh::Number>& Kwv = context.get_elem_jacobian(_disp_vars.w(),_disp_vars.v());

    unsigned int n_qpoints = context.get_element_qrule().n_points();

    // All shape function gradients are w.r.t. master element coordinates
    const std::vector<std::vector<libMesh::Real> >& dphi_dxi =
      this->get_fe(context)->get_dphidxi();

    const std::vector<std::vector<libMesh::Real> >& dphi_deta =
      this->get_fe(context)->get_dphideta();

    const libMesh::DenseSubVector<libMesh::Number>& u_coeffs = context.get_elem_solution( _disp_vars.u() );
    const libMesh::DenseSubVector<libMesh::Number>& v_coeffs = context.get_elem_solution( _disp_vars.v() );
    const libMesh::DenseSubVector<libMesh::Number>& w_coeffs = context.get_elem_solution( _disp_vars.w() );

    const std::vector<libMesh::RealGradient>& dxdxi  = this->get_fe(context)->get_dxyzdxi();
    const std::vector<libMesh::RealGradient>& dxdeta = this->get_fe(context)->get_dxyzdeta();

    for (unsigned int qp=0; qp != n_qpoints; qp++)
      {
        // sqrt(det(a_cov)), a_cov being the covariant metric tensor of undeformed body
        libMesh::Real sqrt_a = sqrt( dxdxi[qp]*dxdxi[qp]*dxdeta[qp]*dxdeta[qp]
                                     - dxdxi[qp]*dxdeta[qp]*dxdeta[qp]*dxdxi[qp] );

        // Gradients are w.r.t. master element coordinates
        libMesh::Gradient grad_u, grad_v, grad_w;
        for( unsigned int d = 0; d < n_u_dofs; d++ )
          {
            libMesh::RealGradient u_gradphi( dphi_dxi[d][qp], dphi_deta[d][qp] );
            grad_u += u_coeffs(d)*u_gradphi;
            grad_v += v_coeffs(d)*u_gradphi;
            grad_w += w_coeffs(d)*u_gradphi;
          }

        libMesh::RealGradient dudxi( grad_u(0), grad_v(0), grad_w(0) );
        libMesh::RealGradient dudeta( grad_u(1), grad_v(1), grad_w(1) );

        libMesh::RealGradient A_1 = dxdxi[qp] + dudxi;
        libMesh::RealGradient A_2 = dxdeta[qp] + dudeta;

        libMesh::RealGradient A_3 = A_1.cross(A_2);

        /* The formula here is actually
           P*\sqrt{\frac{A}{a}}*A_3, where A_3 is a unit vector
           But, |A_3| = \sqrt{A} so the normalizing part kills
           the \sqrt{A} in the numerator, so we can leave it out
           and *not* normalize A_3.
         */
        libMesh::RealGradient traction = _pressure/sqrt_a*A_3;

        libMesh::Real jac = JxW[qp];

        for (unsigned int i=0; i != n_u_dofs; i++)
          {
            Fu(i) -= traction(0)*u_phi[i][qp]*jac;

            Fv(i) -= traction(1)*u_phi[i][qp]*jac;

            Fw(i) -= traction(2)*u_phi[i][qp]*jac;

            if( compute_jacobian )
              {
                for (unsigned int j=0; j != n_u_dofs; j++)
                  {
                    libMesh::RealGradient u_gradphi( dphi_dxi[j][qp], dphi_deta[j][qp] );

                    const libMesh::Real dt0_dv = _pressure/sqrt_a*(u_gradphi(0)*A_2(2) - A_1(2)*u_gradphi(1));
                    const libMesh::Real dt0_dw = _pressure/sqrt_a*(A_1(1)*u_gradphi(1) - u_gradphi(0)*A_2(1));

                    const libMesh::Real dt1_du = _pressure/sqrt_a*(A_1(2)*u_gradphi(1) - u_gradphi(0)*A_2(2));
                    const libMesh::Real dt1_dw = _pressure/sqrt_a*(u_gradphi(0)*A_2(0) - A_1(0)*u_gradphi(1));

                    const libMesh::Real dt2_du = _pressure/sqrt_a*(u_gradphi(0)*A_2(1) - A_1(1)*u_gradphi(1));
                    const libMesh::Real dt2_dv = _pressure/sqrt_a*(A_1(0)*u_gradphi(1) - u_gradphi(0)*A_2(0));

                    Kuv(i,j) -= dt0_dv*u_phi[i][qp]*jac;
                    Kuw(i,j) -= dt0_dw*u_phi[i][qp]*jac;

                    Kvu(i,j) -= dt1_du*u_phi[i][qp]*jac;
                    Kvw(i,j) -= dt1_dw*u_phi[i][qp]*jac;

                    Kwu(i,j) -= dt2_du*u_phi[i][qp]*jac;
                    Kwv(i,j) -= dt2_dv*u_phi[i][qp]*jac;
                  }
              }
          }
      }

    return;
  }

  void ElasticMembraneConstantPressure::reset_pressure( libMesh::Real pressure_in )
  {
    _pressure = pressure_in;
    return;
  }

} // end namespace GRINS