#include <velocity_penalty_base.h>

Inheritance diagram for GRINS::VelocityPenaltyBase< Viscosity >:

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Collaboration diagram for GRINS::VelocityPenaltyBase< Viscosity >:

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Public Member Functions
	VelocityPenaltyBase (const std::string &physics_name, const GetPot &input)

	~VelocityPenaltyBase ()

void	set_time_evolving_vars (libMesh::FEMSystem *system)
	Sets velocity variables to be time-evolving. More...

bool	compute_force (const libMesh::Point &point, const AssemblyContext &context, const libMesh::NumberVectorValue &U, libMesh::NumberVectorValue &F, libMesh::NumberTensorValue *dFdU=NULL)

Public Member Functions inherited from GRINS::IncompressibleNavierStokesBase< Viscosity >
	IncompressibleNavierStokesBase (const std::string &my_physics_name, const std::string &core_physics_name, const GetPot &input)

	~IncompressibleNavierStokesBase ()

virtual void	init_variables (libMesh::FEMSystem *system)
	Initialization of Navier-Stokes variables. More...

virtual void	init_context (AssemblyContext &context)
	Initialize context for added physics variables. More...

virtual void	register_parameter (const std::string &param_name, libMesh::ParameterMultiAccessor< libMesh::Number > &param_pointer) const
	Each subclass will register its copy of an independent. More...

libMesh::Real	get_viscosity_value (AssemblyContext &context, unsigned int qp) const

Public Member Functions inherited from GRINS::Physics
	Physics (const GRINS::PhysicsName &physics_name, const GetPot &input)

virtual	~Physics ()

virtual bool	enabled_on_elem (const libMesh::Elem *elem)
	Find if current physics is active on supplied element. More...

void	set_is_steady (bool is_steady)
	Sets whether this physics is to be solved with a steady solver or not. More...

bool	is_steady () const
	Returns whether or not this physics is being solved with a steady solver. More...

virtual void	auxiliary_init (MultiphysicsSystem &system)
	Any auxillary initialization a Physics class may need. More...

virtual void	register_postprocessing_vars (const GetPot &input, PostProcessedQuantities< libMesh::Real > &postprocessing)
	Register name of postprocessed quantity with PostProcessedQuantities. More...

virtual void	element_time_derivative (bool compute_jacobian, AssemblyContext &context, CachedValues &cache)
	Time dependent part(s) of physics for element interiors. More...

virtual void	side_time_derivative (bool compute_jacobian, AssemblyContext &context, CachedValues &cache)
	Time dependent part(s) of physics for boundaries of elements on the domain boundary. More...

virtual void	nonlocal_time_derivative (bool compute_jacobian, AssemblyContext &context, CachedValues &cache)
	Time dependent part(s) of physics for scalar variables. More...

virtual void	element_constraint (bool compute_jacobian, AssemblyContext &context, CachedValues &cache)
	Constraint part(s) of physics for element interiors. More...

virtual void	side_constraint (bool compute_jacobian, AssemblyContext &context, CachedValues &cache)
	Constraint part(s) of physics for boundaries of elements on the domain boundary. More...

virtual void	nonlocal_constraint (bool compute_jacobian, AssemblyContext &context, CachedValues &cache)
	Constraint part(s) of physics for scalar variables. More...

virtual void	damping_residual (bool compute_jacobian, AssemblyContext &context, CachedValues &cache)
	Damping matrix part(s) for element interiors. All boundary terms lie within the time_derivative part. More...

virtual void	mass_residual (bool compute_jacobian, AssemblyContext &context, CachedValues &cache)
	Mass matrix part(s) for element interiors. All boundary terms lie within the time_derivative part. More...

virtual void	nonlocal_mass_residual (bool compute_jacobian, AssemblyContext &context, CachedValues &cache)
	Mass matrix part(s) for scalar variables. More...

void	init_ics (libMesh::FEMSystem *system, libMesh::CompositeFunction< libMesh::Number > &all_ics)

virtual void	compute_element_time_derivative_cache (const AssemblyContext &context, CachedValues &cache)

virtual void	compute_side_time_derivative_cache (const AssemblyContext &context, CachedValues &cache)

virtual void	compute_nonlocal_time_derivative_cache (const AssemblyContext &context, CachedValues &cache)

virtual void	compute_element_constraint_cache (const AssemblyContext &context, CachedValues &cache)

virtual void	compute_side_constraint_cache (const AssemblyContext &context, CachedValues &cache)

virtual void	compute_nonlocal_constraint_cache (const AssemblyContext &context, CachedValues &cache)

virtual void	compute_damping_residual_cache (const AssemblyContext &context, CachedValues &cache)

virtual void	compute_mass_residual_cache (const AssemblyContext &context, CachedValues &cache)

virtual void	compute_nonlocal_mass_residual_cache (const AssemblyContext &context, CachedValues &cache)

virtual void	compute_postprocessed_quantity (unsigned int quantity_index, const AssemblyContext &context, const libMesh::Point &point, libMesh::Real &value)

ICHandlingBase *	get_ic_handler ()

Public Member Functions inherited from GRINS::ParameterUser
	ParameterUser (const std::string &user_name)

virtual	~ParameterUser ()

virtual void	set_parameter (libMesh::Number &param_variable, const GetPot &input, const std::string &param_name, libMesh::Number param_default)
	Each subclass can simultaneously read a parameter value from. More...

virtual void	set_parameter (libMesh::ParsedFunction< libMesh::Number, libMesh::Gradient > &func, const GetPot &input, const std::string &func_param_name, const std::string &param_default)
	Each subclass can simultaneously read a parsed function from. More...

virtual void	set_parameter (libMesh::ParsedFEMFunction< libMesh::Number > &func, const GetPot &input, const std::string &func_param_name, const std::string &param_default)
	Each subclass can simultaneously read a parsed function from. More...

virtual void	move_parameter (const libMesh::Number &old_parameter, libMesh::Number &new_parameter)
	When cloning an object, we need to update parameter pointers. More...

virtual void	move_parameter (const libMesh::ParsedFunction< libMesh::Number, libMesh::Gradient > &old_func, libMesh::ParsedFunction< libMesh::Number, libMesh::Gradient > &new_func)
	When cloning an object, we need to update parameter pointers. More...

virtual void	move_parameter (const libMesh::ParsedFEMFunction< libMesh::Number > &old_func, libMesh::ParsedFEMFunction< libMesh::Number > &new_func)
	When cloning an object, we need to update parameter pointers. More...

Protected Attributes
std::string	base_physics_name

bool	_quadratic_scaling

libMesh::UniquePtr< libMesh::FEMFunctionBase< libMesh::Number > >	normal_vector_function

libMesh::UniquePtr< libMesh::FEMFunctionBase< libMesh::Number > >	base_velocity_function

Protected Attributes inherited from GRINS::IncompressibleNavierStokesBase< Viscosity >
unsigned int	_dim
	Physical dimension of problem. More...

VelocityFEVariables	_flow_vars

PressureFEVariable	_press_var

libMesh::Number	_rho
	Material parameters, read from input. More...

Viscosity	_mu
	Viscosity object. More...

Protected Attributes inherited from GRINS::Physics
const PhysicsName	_physics_name
	Name of the physics object. Used for reading physics specific inputs. More...

GRINS::ICHandlingBase *	_ic_handler

std::set< libMesh::subdomain_id_type >	_enabled_subdomains
	Subdomains on which the current Physics class is enabled. More...

Private Member Functions
	VelocityPenaltyBase ()

void	read_input_options (const GetPot &input)
	Read options from GetPot input file. More...

Private Attributes
const GetPot &	_input

Additional Inherited Members
Static Public Member Functions inherited from GRINS::Physics
static void	set_is_axisymmetric (bool is_axisymmetric)
	Set whether we should treat the problem as axisymmetric. More...

static bool	is_axisymmetric ()

Static Public Attributes inherited from GRINS::ParameterUser
static std::string	zero_vector_function = std::string("{0}")
	A parseable function string with LIBMESH_DIM components, all 0. More...

Protected Member Functions inherited from GRINS::Physics
libMesh::UniquePtr< libMesh::FEGenericBase< libMesh::Real > >	build_new_fe (const libMesh::Elem elem, const libMesh::FEGenericBase< libMesh::Real > fe, const libMesh::Point p)

void	parse_enabled_subdomains (const GetPot &input, const std::string &physics_name)

Static Protected Attributes inherited from GRINS::Physics
static bool	_is_steady = false
	Caches whether or not the solver that's being used is steady or not. More...

static bool	_is_axisymmetric = false
	Caches whether we are solving an axisymmetric problem or not. More...

Detailed Description

template<class Viscosity>
class GRINS::VelocityPenaltyBase< Viscosity >

Definition at line 45 of file velocity_penalty_base.h.

Constructor & Destructor Documentation

template<class Mu >

GRINS::VelocityPenaltyBase< Mu >::VelocityPenaltyBase	(	const std::string &	physics_name,
		const GetPot &	input
	)

Definition at line 39 of file velocity_penalty_base.C.

References GRINS::Physics::_physics_name, GRINS::VelocityPenaltyBase< Viscosity >::base_physics_name, GRINS::VelocityPenaltyBase< Viscosity >::read_input_options(), GRINS::PhysicsNaming::velocity_penalty2(), GRINS::PhysicsNaming::velocity_penalty2_adjoint_stab(), GRINS::PhysicsNaming::velocity_penalty3(), and GRINS::PhysicsNaming::velocity_penalty3_adjoint_stab().

     : IncompressibleNavierStokesBase<Mu>(physics_name,
                                          PhysicsNaming::incompressible_navier_stokes(), /* "core" Physics name */
                                          input),
     base_physics_name("VelocityPenalty"),
     _quadratic_scaling(false),
     _input(input)
   {
     if (this->_physics_name == PhysicsNaming::velocity_penalty2() ||
         this->_physics_name == PhysicsNaming::velocity_penalty2_adjoint_stab())
       base_physics_name.push_back('2');
 
     if (this->_physics_name == PhysicsNaming::velocity_penalty3() ||
         this->_physics_name == PhysicsNaming::velocity_penalty3_adjoint_stab())
       base_physics_name.push_back('3');
 
     this->read_input_options(input);
   }

template<class Viscosity >

GRINS::VelocityPenaltyBase< Viscosity >::~VelocityPenaltyBase ( )

inline

Definition at line 51 of file velocity_penalty_base.h.

51 {};

template<class Viscosity >

GRINS::VelocityPenaltyBase< Viscosity >::VelocityPenaltyBase ( )

private

Member Function Documentation

template<class Mu >

bool GRINS::VelocityPenaltyBase< Mu >::compute_force	(	const libMesh::Point &	point,
		const AssemblyContext &	context,
		const libMesh::NumberVectorValue &	U,
		libMesh::NumberVectorValue &	F,
		libMesh::NumberTensorValue *	dFdU = `NULL`
	)

Definition at line 92 of file velocity_penalty_base.C.

   {
     // Velocity discrepancy (current velocity minus base velocity)
     // normal to constraint plane, scaled by constraint penalty
     // value
     libMesh::DenseVector<libMesh::Number> output_vec(3);
 
     (*this->normal_vector_function)(context, point, context.time, output_vec);
 
     libMesh::NumberVectorValue U_N(output_vec(0),
                                    output_vec(1),
                                    output_vec(2));
 
     (*this->base_velocity_function)(context, point, context.time, output_vec);
 
     const libMesh::NumberVectorValue U_B(output_vec(0),
                                          output_vec(1),
                                          output_vec(2));
 
     const libMesh::NumberVectorValue U_Rel = U-U_B;
 
     // Old code
     // const libMesh::NumberVectorValue F1 = (U_Rel*U_N)*U_N; //
 
     // With correct sign and more natural normalization
     const libMesh::Number U_N_mag = std::sqrt(U_N*U_N);
 
     if (!U_N_mag)
       return false;
 
     const libMesh::NumberVectorValue U_N_unit = U_N/U_N_mag;
 
     F = -(U_Rel*U_N)*U_N_unit;
 
     if (dFdU)
       for (unsigned int i=0; i != 3; ++i)
         for (unsigned int j=0; j != 3; ++j)
           (*dFdU)(i,j) = -(U_N(j))*U_N_unit(i);
 
     // With quadratic scaling
     if (_quadratic_scaling)
       {
         const libMesh::Number U_Rel_mag = std::sqrt(U_Rel * U_Rel);
 
         // Modify dFdU first so as to reuse the old value of F
         if (dFdU)
           {
             // dU_Rel/dU = I
             // d(U_Rel*U_Rel)/dU = 2*U_Rel
             // d|U_Rel|/dU = U_Rel/|U_Rel|
 
             const libMesh::NumberVectorValue U_Rel_unit = U_Rel/U_Rel_mag;
 
             (*dFdU) *= U_Rel_mag;
 
             if (U_Rel_mag)
               for (unsigned int i=0; i != 3; ++i)
                 for (unsigned int j=0; j != 3; ++j)
                   (*dFdU)(i,j) += F(i)*U_Rel_unit(j);
           }
 
         F *= U_Rel_mag;
       }
 
     // With correction term to avoid doing work on flow
     bool do_correction = false;
     if (do_correction)
       {
         if (dFdU)
           libmesh_not_implemented();
 
         const libMesh::Number U_Rel_mag_sq = U_Rel * U_Rel;
         if (U_Rel_mag_sq)
           {
             F -= (U_Rel*F)*U_Rel/U_Rel_mag_sq;
           }
       }
     return true;
   }

template<class Mu >

void GRINS::VelocityPenaltyBase< Mu >::read_input_options ( const GetPot & input )

private

Read options from GetPot input file.

Definition at line 59 of file velocity_penalty_base.C.

Referenced by GRINS::VelocityPenaltyBase< Viscosity >::VelocityPenaltyBase().

   {
     _quadratic_scaling =
       input("Physics/"+base_physics_name+"/quadratic_scaling", false);
   }

template<class Mu >

void GRINS::VelocityPenaltyBase< Mu >::set_time_evolving_vars ( libMesh::FEMSystem * system )

virtual

Sets velocity variables to be time-evolving.

Reimplemented from GRINS::IncompressibleNavierStokesBase< Viscosity >.

Definition at line 66 of file velocity_penalty_base.C.

   {
     libMesh::ParsedFEMFunction<libMesh::Number> *nvf
       (new libMesh::ParsedFEMFunction<libMesh::Number> (*system, ""));
     this->normal_vector_function.reset(nvf);
 
     this->set_parameter(*nvf, _input,
                         "Physics/"+base_physics_name+"/penalty_function",
                         this->zero_vector_function);
 
     libMesh::ParsedFEMFunction<libMesh::Number> *bvf
       (new libMesh::ParsedFEMFunction<libMesh::Number> (*system, ""));
     this->base_velocity_function.reset(bvf);
 
     this->set_parameter(*bvf, _input,
                         "Physics/"+base_physics_name+"/base_velocity",
                         this->zero_vector_function);
 
     if ((nvf->expression() == this->zero_vector_function) &&
         (bvf->expression() == this->zero_vector_function))
       std::cout << "Warning! Zero VelocityPenalty specified!" << std::endl;
   }

Member Data Documentation

template<class Viscosity >

const GetPot& GRINS::VelocityPenaltyBase< Viscosity >::_input

private

Definition at line 76 of file velocity_penalty_base.h.

template<class Viscosity >

bool GRINS::VelocityPenaltyBase< Viscosity >::_quadratic_scaling

protected

Definition at line 66 of file velocity_penalty_base.h.

template<class Viscosity >

std::string GRINS::VelocityPenaltyBase< Viscosity >::base_physics_name

protected

Definition at line 64 of file velocity_penalty_base.h.

Referenced by GRINS::VelocityPenaltyBase< Viscosity >::VelocityPenaltyBase().

template<class Viscosity >

libMesh::UniquePtr<libMesh::FEMFunctionBase<libMesh::Number> > GRINS::VelocityPenaltyBase< Viscosity >::base_velocity_function

protected

Definition at line 72 of file velocity_penalty_base.h.

template<class Viscosity >

libMesh::UniquePtr<libMesh::FEMFunctionBase<libMesh::Number> > GRINS::VelocityPenaltyBase< Viscosity >::normal_vector_function

protected

Definition at line 69 of file velocity_penalty_base.h.

The documentation for this class was generated from the following files:

src/physics/include/grins/velocity_penalty_base.h
src/physics/src/velocity_penalty_base.C

Public Member Functions

Protected Attributes

Private Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

template<class Viscosity> class GRINS::VelocityPenaltyBase< Viscosity >

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<class Viscosity>
class GRINS::VelocityPenaltyBase< Viscosity >