#include <mesh_adaptive_solver_base.h>

Inheritance diagram for GRINS::MeshAdaptiveSolverBase:

Collaboration diagram for GRINS::MeshAdaptiveSolverBase:

Public Member Functions
	MeshAdaptiveSolverBase (const GetPot &input)

virtual	~MeshAdaptiveSolverBase ()

Protected Types
enum	RefinementFlaggingType { INVALID = 0, ERROR_TOLERANCE, N_ELEM_TARGET, ERROR_FRACTION, ELEM_FRACTION, MEAN_STD_DEV }

Protected Member Functions
void	build_mesh_refinement (libMesh::MeshBase &mesh)

void	set_refinement_type (const GetPot &input, const MeshAdaptivityOptions &mesh_adaptivity_options, RefinementFlaggingType &refinement_type)

bool	check_for_convergence (SolverContext &context, const libMesh::ErrorVector &error) const

void	flag_elements_for_refinement (const libMesh::ErrorVector &error)

void	estimate_error_for_amr (SolverContext &context, libMesh::ErrorVector &error)

void	perform_amr (SolverContext &context, const libMesh::ErrorVector &error)

Protected Attributes
ErrorEstimatorOptions	_error_estimator_options

MeshAdaptivityOptions	_mesh_adaptivity_options

RefinementFlaggingType	_refinement_type

libMesh::UniquePtr< libMesh::MeshRefinement >	_mesh_refinement

Private Member Functions
	MeshAdaptiveSolverBase ()

Detailed Description

Definition at line 52 of file mesh_adaptive_solver_base.h.

Member Enumeration Documentation

enum GRINS::MeshAdaptiveSolverBase::RefinementFlaggingType

protected

Enumerator
INVALID
ERROR_TOLERANCE
N_ELEM_TARGET
ERROR_FRACTION
ELEM_FRACTION
MEAN_STD_DEV

Definition at line 65 of file mesh_adaptive_solver_base.h.

                                { INVALID = 0,
                                  ERROR_TOLERANCE,
                                  N_ELEM_TARGET,
                                  ERROR_FRACTION,
                                  ELEM_FRACTION,
                                  MEAN_STD_DEV };

Constructor & Destructor Documentation

GRINS::MeshAdaptiveSolverBase::MeshAdaptiveSolverBase ( const GetPot & input )

Definition at line 40 of file mesh_adaptive_solver_base.C.

References _mesh_adaptivity_options, _refinement_type, and set_refinement_type().

     : _error_estimator_options(input),
       _mesh_adaptivity_options(input),
       _refinement_type(INVALID)
   {
     this->set_refinement_type( input, _mesh_adaptivity_options, _refinement_type );
   }

virtual GRINS::MeshAdaptiveSolverBase::~MeshAdaptiveSolverBase ( )

inlinevirtual

Definition at line 58 of file mesh_adaptive_solver_base.h.

58 {}

GRINS::MeshAdaptiveSolverBase::MeshAdaptiveSolverBase ( )

private

Member Function Documentation

void GRINS::MeshAdaptiveSolverBase::build_mesh_refinement ( libMesh::MeshBase & mesh )

protected

Definition at line 48 of file mesh_adaptive_solver_base.C.

Referenced by GRINS::SteadyMeshAdaptiveSolver::solve(), and GRINS::UnsteadyMeshAdaptiveSolver::solve().

   {
     _mesh_refinement.reset( new libMesh::MeshRefinement( mesh ) );
     _mesh_refinement->coarsen_by_parents() = _mesh_adaptivity_options.coarsen_by_parents();
     _mesh_refinement->absolute_global_tolerance() = _mesh_adaptivity_options.absolute_global_tolerance();
     _mesh_refinement->nelem_target() = _mesh_adaptivity_options.nelem_target();
     _mesh_refinement->refine_fraction() = _mesh_adaptivity_options.refine_fraction();
     _mesh_refinement->coarsen_fraction() = _mesh_adaptivity_options.coarsen_fraction();
     _mesh_refinement->coarsen_threshold() = _mesh_adaptivity_options.coarsen_threshold();
     _mesh_refinement->node_level_mismatch_limit() = _mesh_adaptivity_options.node_level_mismatch_limit();
     _mesh_refinement->edge_level_mismatch_limit() = _mesh_adaptivity_options.edge_level_mismatch_limit();
     _mesh_refinement->face_level_mismatch_limit() = _mesh_adaptivity_options.face_level_mismatch_limit();
     _mesh_refinement->enforce_mismatch_limit_prior_to_refinement() = _mesh_adaptivity_options.enforce_mismatch_limit_prior_to_refinement();
     _mesh_refinement->max_h_level() = _mesh_adaptivity_options.max_h_level();
   }

bool GRINS::MeshAdaptiveSolverBase::check_for_convergence	(	SolverContext &	context,
		const libMesh::ErrorVector &	error
	)		const

protected

Definition at line 120 of file mesh_adaptive_solver_base.C.

References _mesh_adaptivity_options, GRINS::MeshAdaptivityOptions::absolute_global_tolerance(), and GRINS::SolverContext::do_adjoint_solve.

Referenced by GRINS::SteadyMeshAdaptiveSolver::solve(), and GRINS::UnsteadyMeshAdaptiveSolver::solve().

   {
     std::cout << "==========================================================" << std::endl
               << "Checking convergence" << std::endl
               << "==========================================================" << std::endl;
 
     bool converged = false;
 
     libMesh::Real error_estimate = 0.0;
 
     if( context.do_adjoint_solve )
       {
         error_estimate = std::accumulate( error.begin(), error.end(), 0.0 );
       }
     else
       {
         error_estimate = error.l2_norm();
       }
 
     std::cout << "==========================================================" << std::endl
               << "Error estimate = " << error_estimate << std::endl
               << "==========================================================" << std::endl;
 
     // For now, we just check the norm
     if( std::fabs(error_estimate) <= _mesh_adaptivity_options.absolute_global_tolerance() )
       {
         converged = true;
       }
 
     return converged;
   }

void GRINS::MeshAdaptiveSolverBase::estimate_error_for_amr	(	SolverContext &	context,
		libMesh::ErrorVector &	error
	)

protected

Definition at line 205 of file mesh_adaptive_solver_base.C.

References _mesh_adaptivity_options, GRINS::SolverContext::equation_system, GRINS::SolverContext::error_estimator, GRINS::MeshAdaptivityOptions::error_plot_prefix(), GRINS::MeshAdaptivityOptions::plot_cell_errors(), and GRINS::SolverContext::system.

Referenced by GRINS::SteadyMeshAdaptiveSolver::solve(), and GRINS::UnsteadyMeshAdaptiveSolver::solve().

   {
     std::cout << "==========================================================" << std::endl
               << "Estimating error" << std::endl
               << "==========================================================" << std::endl;
     context.error_estimator->estimate_error( *context.system, error );
 
     libMesh::MeshBase& mesh = context.equation_system->get_mesh();
 
     // Plot error vector
     if( _mesh_adaptivity_options.plot_cell_errors() )
       {
         error.plot_error( _mesh_adaptivity_options.error_plot_prefix()+".exo", mesh );
       }
   }

void GRINS::MeshAdaptiveSolverBase::flag_elements_for_refinement ( const libMesh::ErrorVector & error )

protected

Definition at line 153 of file mesh_adaptive_solver_base.C.

References _mesh_refinement, _refinement_type, ELEM_FRACTION, ERROR_FRACTION, ERROR_TOLERANCE, INVALID, MEAN_STD_DEV, and N_ELEM_TARGET.

Referenced by perform_amr().

   {
     switch(_refinement_type)
       {
       case(ERROR_TOLERANCE):
         {
           _mesh_refinement->flag_elements_by_error_tolerance( error );
         }
         break;
 
       case(N_ELEM_TARGET):
         {
           _mesh_refinement->flag_elements_by_nelem_target( error );
         }
         break;
 
       case( ERROR_FRACTION ):
         {
           _mesh_refinement->flag_elements_by_error_fraction( error );
         }
         break;
 
       case( ELEM_FRACTION ):
         {
           _mesh_refinement->flag_elements_by_elem_fraction( error );
         }
         break;
 
       case( MEAN_STD_DEV ):
         {
           _mesh_refinement->flag_elements_by_mean_stddev( error );
         }
         break;
 
       case(INVALID):
         {
           std::cerr << "Error: Invalid refinement option!" << std::endl;
           libmesh_error();
         }
         break;
 
         // Wat?!
       default:
         {
           libmesh_error();
         }
 
       } // switch(_refinement_type)
 
     return;
   }

void GRINS::MeshAdaptiveSolverBase::perform_amr	(	SolverContext &	context,
		const libMesh::ErrorVector &	error
	)

protected

Definition at line 221 of file mesh_adaptive_solver_base.C.

References _mesh_refinement, GRINS::SolverContext::equation_system, flag_elements_for_refinement(), and GRINS::SolverContext::system.

Referenced by GRINS::SteadyMeshAdaptiveSolver::solve(), and GRINS::UnsteadyMeshAdaptiveSolver::solve().

   {
     libMesh::MeshBase& mesh = context.equation_system->get_mesh();
 
     std::cout << "==========================================================" << std::endl
               << "Performing Mesh Refinement" << std::endl
               << "==========================================================" << std::endl;
 
     this->flag_elements_for_refinement( error );
     _mesh_refinement->refine_and_coarsen_elements();
 
     // Dont forget to reinit the system after each adaptive refinement!
     context.equation_system->reinit();
 
     // This output cannot be toggled in the input file.
     std::cout << "==========================================================" << std::endl
               << "Refined mesh to " << std::setw(12) << mesh.n_active_elem()
               << " active elements" << std::endl
               << "            " << std::setw(16) << context.system->n_active_dofs()
               << " active dofs" << std::endl
               << "==========================================================" << std::endl;
   }

void GRINS::MeshAdaptiveSolverBase::set_refinement_type	(	const GetPot &	input,
		const MeshAdaptivityOptions &	mesh_adaptivity_options,
		MeshAdaptiveSolverBase::RefinementFlaggingType &	refinement_type
	)

protected

Definition at line 64 of file mesh_adaptive_solver_base.C.

References ELEM_FRACTION, ERROR_FRACTION, ERROR_TOLERANCE, MEAN_STD_DEV, N_ELEM_TARGET, and GRINS::MeshAdaptivityOptions::refinement_strategy().

Referenced by MeshAdaptiveSolverBase().

   {
     const std::string& refinement_stategy = mesh_adaptivity_options.refinement_strategy();
 
     if( refinement_stategy == std::string("error_tolerance") )
       {
         refinement_type = ERROR_TOLERANCE;
       }
 
     else if( refinement_stategy == std::string("nelem_target") )
       {
         refinement_type = N_ELEM_TARGET;
 
         if( !input.have_variable("MeshAdaptivity/nelem_target") )
           {
             std::cerr << "Error: Must specify nelem_target for" << std::endl
                       << "       for error_tolerance refinement strategy."
                       << std::endl;
 
             libmesh_error();
           }
       }
 
     else if( refinement_stategy == std::string("error_fraction") )
       {
         refinement_type = ERROR_FRACTION;
       }
 
     else if( refinement_stategy == std::string("elem_fraction") )
       {
         refinement_type = ELEM_FRACTION;
       }
 
     else if( refinement_stategy == std::string("mean_std_dev") )
       {
         refinement_type = MEAN_STD_DEV;
       }
 
     else
       {
         std::cerr << "Error: Invalid refinement strategy " << refinement_stategy << std::endl
                   << "       Valid refinement strategy options are: absolute_global_tolerance" << std::endl
                   << "                                              error_tolerance" << std::endl
                   << "                                              nelem_target" << std::endl
                   << "                                              error_fraction" << std::endl
                   << "                                              elem_fraction" << std::endl
                   << "                                              mean_std_dev" << std::endl;
 
         libmesh_error();
       }
 
     return;
   }